antibody 98% powder CAS 60940-34-3 Ebselen

Ebselen (DR 3305, SPI-1005, PZ-51) is a small-molecule capsid inhibitor of HIV-1 Replication with IC50 of 46.1 nM in TR-FRET assay.

Ebselen (CAS 60940-34-3) Glutathione Peroxidase Mimetic | GPx Mimic, Antioxidant, Mpro Inhibitor

Ebselen CAS 60940-34-3
Multi-Target Organoselenium Antioxidant

A glutathione peroxidase (GPx) mimetic with broad pharmacological activity — antioxidant, anti-inflammatory, neuroprotective, and antiviral. Identified as the most potent SARS-CoV-2 Mpro inhibitor from a Nature 2020 screen of 10,000+ compounds. Also a validated ferroptosis inhibitor and IDO1 modulator. Extensively studied in human clinical trials (stroke Phase III, bipolar disorder, hearing loss, diabetes).

GPx Mimetic Mpro Inhibitor Ferroptosis Inhibitor Antioxidant Neuroprotective Anti-inflammatory IDO1 Inhibitor
274.18
MW (C13H9NOSe)
≥98%
Purity (TLC/HPLC)
Multi-target
GPx / Mpro / IDO1 / 5-LO

Molecular Information

Name: Ebselen
CAS: 60940-34-3
Formula: C13H9NOSe
MW: 274.18 g/mol
SMILES: O=C1N([Se]c2ccccc12)
  c3ccccc3
InChIKey: DYEFUKCXAQOFHX
  -UHFFFAOYSA-N
MP: 176-184°C
Appearance: White to pale yellow powder
Synonyms: PZ-51 / DR-3305 /
  2-Phenyl-1,2-benzisoselenazol-3(2H)-one
Storage: 2-8°C, protect from light
🧪
CAS Number
60940-34-3
⚖️
Molecular Weight
274.18
🎯
Primary Activity
GPx Mimetic
Purity
≥98%

Product Technical Specifications

Complete physicochemical properties and QC parameters for Ebselen (CAS 60940-34-3)

📋 Physicochemical Properties

  • Product NameEbselen
  • IUPAC Name2-Phenyl-1,2-benzisoselenazol-3(2H)-one
  • CAS Number60940-34-3
  • Code NamesPZ-51 / DR-3305
  • Molecular FormulaC13H9NOSe
  • Molecular Weight274.18 g/mol
  • SMILESO=C1N([Se]c2ccccc12)c3ccccc3
  • InChI1S/C13H9NOSe/c15-13-11-8-4-5-9-12(11)16-14(13)10-6-2-1-3-7-10/h1-9H
  • InChIKeyDYEFUKCXAQOFHX-UHFFFAOYSA-N
  • AppearanceWhite to pale yellow powder or crystals
  • Melting Point176-184°C
  • MDL NumberMFCD00210937
  • PubChem CID3194
  • ChEBI IDCHEBI:47824

🔬 Quality Control & Handling

  • Purity (TLC/HPLC)≥98%
  • FormPowder or crystalline powder
  • ColorWhite to yellow to green (trace)
  • Storage Condition2-8°C, protect from light
  • Storage Class6.1D (toxic)
  • GHS ClassificationAcute Tox. 3 (Oral/Inhalation); STOT RE 2; Aquatic Acute/Chronic 1
  • SolubilityDMSO; chloroform (~20 mg/mL); ethanol; methanol; acetone; acetonitrile
  • QC DocumentationCOA / HPLC / NMR / MS / MSDS
  • Pack Sizes1g / 5g / 10g / 100g / 1KG
  • Stock StatusIn Stock
  • Use StatementResearch use only; not for human/clinical use

Key Molecular Targets & Enzyme Inhibition Profile

Ebselen's unique selenium atom enables covalent modification of protein cysteine residues, endowing it with a remarkably broad target spectrum

🧬 GPx / GPx4 (Ferroptosis) 🦠 SARS-CoV-2 Mpro 🔥 5-Lipoxygenase 🧫 IDO1 ⚡ NADPH Oxidase 🔒 Protein Kinase C 💨 Nitric Oxide Synthase 🛡️ NF-κB Pathway 🧪 Cyclooxygenase ⚙️ H+/K+-ATPase 🩸 Trypanothione Reductase 🔑 HCV Helicase 📊 Receptor Tyrosine Kinase 🧽 NMDA Receptor 📐 Acyl-CoA DH (NADP+) ⚓ Cytosine Deaminase

How Ebselen Works: Triple Pillars of Pharmacological Action

Ebselen exerts its effects through three distinct biochemical mechanisms, making it one of the most versatile small-molecule tool compounds available

1

GPx Enzyme Mimicry

Ebselen catalytically reduces H2O2, lipid hydroperoxides, and peroxynitrite (ONOO–) using glutathione (GSH) or other thiols as the reducing co-substrate, functionally replacing GPx1 and GPx4.

2

Covalent Cysteine Modification

The selenium atom forms a reversible selenosulfide (-Se-S-) bond with active-site cysteine residues on target proteins (e.g. Mpro Cys145, IDO1, lipoxygenases), modulating activity.

3

Free Radical Scavenging

Directly neutralizes reactive oxygen and nitrogen species (ROS/RNS) such as superoxide, hydroxyl radicals and peroxynitrite, providing immediate cellular protection during oxidative stress.

Research Applications & Disease Models

Ebselen's polypharmacology makes it relevant across neuroscience, virology, oncology, immunology and beyond

🦠

SARS-CoV-2 / COVID-19 Research

Identified as the #1 Mpro inhibitor in Nature 2020 (Jin et al., screen of >10,000 compounds); binds both catalytic and allosteric sites (Science Advances 2020). Also attenuates NF-κB-driven inflammatory cytokines relevant to COVID-19 lung pathology.

Nature 2020
🧠

Stroke & Cerebral Ischemia

Completed Phase III clinical trials for acute ischemic stroke in Japan. Neuroprotective effects via GPx-like activity, reducing post-ischemic lipid peroxidation and glutamate-induced excitotoxicity at NMDA receptors.

Phase III Clinical
💥

Ferroptosis Research

Functions as a GPx4 mimetic, reducing lipid hydroperoxides that drive ferroptotic cell death. A critical tool compound for ferroptosis studies — an iron-dependent, non-apoptotic form of regulated necrosis with implications in cancer, neurodegeneration, and ischemia-reperfusion injury.

Ferroptosis Inhibitor
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Inflammation & Oxidative Stress

Dual inhibition of 5-lipoxygenase and cyclooxygenase, suppression of NF-κB activation, and reduction of pro-inflammatory cytokines (TNF-α, IL-6). Reduces LDL oxidation and atherosclerosis in preclinical models. Inhibits NADPH oxidase and inducible NOS.

Anti-inflammatory
😷

Antimicrobial & Antiviral

Active against multidrug-resistant Staphylococcus aureus (MRSA) and clinically resistant Gram-negative bacteria (when combined with silver). Inhibits HCV helicase and SARS-CoV-2 Mpro. Also active against fungi and inhibits trypanothione reductase (Trypanosoma).

Antimicrobial
🧬

Oncology & Cancer Biology

Induces apoptosis in cancer cells; inhibits receptor tyrosine kinases; downregulates IDO1 (indoleamine 2,3-dioxygenase) — a key immunosuppressive enzyme in the tumor microenvironment. Chemopreventive activity in inflammation-associated carcinogenesis models.

Oncology
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Metabolic & Organ Protection

Clinically investigated for Type 1 and Type 2 diabetes mellitus; hepatoprotective against drug-induced liver injury; inhibits gastric H+/K+-ATPase (pump inhibitor activity). Protects against cisplatin-induced nephrotoxicity and ototoxicity.

Clinical Trials
🎧

Hearing Loss & Meniere's Disease

Clinically studied for Meniere's Disease (inner ear disorder) and noise-induced hearing loss. Antioxidant and anti-inflammatory effects in the cochlea; protects auditory hair cells from ROS-mediated damage.

Audiology
🧘

Bipolar Disorder & Psychiatry

Investigated in clinical trials for bipolar disorder; proposed mechanism involves modulation of the inositol monophosphatase pathway (lithium-mimetic effect) and attenuation of neuroinflammation via inhibition of microglial activation.

Psychiatry

Key Literature & Landmark Publications

Seminal papers on Ebselen's discovery, mechanism, and therapeutic application

Sies H. Ebselen, a selenoorganic compound as glutathione peroxidase mimic. Free Radical Biology and Medicine. 1993;14(3):313-323.
doi: 10.1016/0891-5849(93)90028-S
Schewe T. Molecular actions of Ebselen — an antiinflammatory antioxidant. General Pharmacology: The Vascular System. 1995;26(6):1153-1169.
doi: 10.1016/0306-3623(95)00003-J
Jin Z, Du X, Xu Y, et al. Structure of Mpro from SARS-CoV-2 and discovery of its inhibitors. Nature. 2020;582:289-293.
doi: 10.1038/s41586-020-2223-y
Menendez CA, Bylehn F, Perez-Lemus GR, et al. Molecular characterization of ebselen binding activity to SARS-CoV-2 main protease. Science Advances. 2020;6(37):eabd0345.
doi: 10.1126/sciadv.abd0345
Sies H, Parnham MJ. Potential therapeutic use of ebselen for COVID-19 and other respiratory viral infections. Free Radical Biology Medicine. 2020;156:107-112.
doi: 10.1016/j.freeradbiomed.2020.06.032
Yamaguchi T, Sano K, Takakura K, et al. Ebselen in acute ischemic stroke: a placebo-controlled, double-blind clinical trial. Stroke. 1998;29(1):12-17.
doi: 10.1161/01.STR.29.1.12
Wei W, Ma B, Li HY, et al. Ebselen as a potent covalent inhibitor of IDO1. European Journal of Medicinal Chemistry. 2018;156:680-691.
doi: 10.1016/j.ejmech.2018.07.022
Seiler A, Schneider M, et al. Glutathione peroxidase 4 senses and translates oxidative stress into 12/15-lipoxygenase dependent- and AIF-mediated cell death. Cell Metabolism. 2008;8(3):237-248.
doi: 10.1016/j.cmet.2008.07.005

Available Sizes & Ordering

Research-grade Ebselen (CAS 60940-34-3) with full QC documentation; research packs and bulk custom quantities supported

TierPack SizeStock StatusSuitable ForLead Time
Standard1 gIn StockBiochemical / cell-based assaysSame/next-day ship
Medium5 gIn StockIn vivo pharmacology, long-term studiesSame/next-day ship
Large10 gIn StockMulti-lab collaborations, HTSSame/next-day ship
Bulk100 gIn StockProcess development, scale-upQuote to confirm
Industrial1 KGMade to orderPilot/production scale, CMO supplyBatch delivery

💡 Reference sizes shown above; for exact pricing and availability please contact us for a quote. Bulk orders qualify for tiered discounts.

Frequently Asked Questions (FAQ)

What is Ebselen (CAS 60940-34-3), and what makes it unique?
Ebselen is a synthetic organoselenium compound (2-phenyl-1,2-benzisoselenazol-3(2H)-one, C13H9NOSe, MW 274.18) with the rare ability to act as a functional glutathione peroxidase (GPx) enzyme mimetic. Its selenium atom can form reversible covalent selenosulfide bonds with protein cysteine residues, giving it a remarkably broad pharmacological profile. Originally developed by Daiichi Sankyo (Japan) / Rhône-Poulenc Rorer, it has completed multiple human clinical trials and is widely used as a research tool across virology, neuroscience, oncology and immunology.
Why is Ebselen considered a SARS-CoV-2 Mpro inhibitor?
In a landmark Nature 2020 paper (Jin et al.), Ebselen was identified as the most potent inhibitor of the SARS-CoV-2 main protease (Mpro, also called 3CLpro) from a structure-based screen of over 10,000 compounds. The Mpro enzyme cleaves the viral polyprotein and is essential for coronavirus replication. A follow-up Science Advances 2020 study (Menendez et al.) used molecular dynamics to show that Ebselen binds Mpro at two sites: the catalytic Cys145 and a distant allosteric pocket that regulates catalytic-site access. Note that later studies (ACS Pharmacol. Transl. Sci. 2020) have shown the inhibition is attenuated by DTT, indicating covalent cysteine targeting.
How does Ebselen differ from conventional antioxidants like NAC or Vitamin C?
Unlike stoichiometric antioxidants (NAC, ascorbate) that are consumed in a 1:1 ratio with ROS, Ebselen acts as a catalytic enzyme mimetic — it turns over continuously in the presence of GSH or other thiols, capable of reducing multiple equivalents of hydroperoxides. It also uniquely handles peroxynitrite (ONOO–), a highly reactive nitrogen species that conventional antioxidants cannot efficiently detoxify. Additionally, its covalent cysteine-modifying activity gives it pharmacological effects (enzyme inhibition, signaling modulation) beyond simple redox buffering.
What clinical trials has Ebselen been in?
Ebselen has been investigated in human clinical trials for: acute ischemic stroke (Phase III, Japan — Yamaguchi et al., Stroke 1998), bipolar disorder, Meniere's Disease (inner ear), noise-induced hearing loss, Type 1 diabetes, and Type 2 diabetes mellitus. It has an established human safety and tolerability profile from multiple completed studies. It is also being explored as a potential COVID-19 therapeutic via Mpro inhibition.
What is the relationship between Ebselen and ferroptosis?
Ebselen is a GPx4 mimetic — it catalytically reduces lipid hydroperoxides, the same reaction performed by GPx4, which is the central gatekeeper of ferroptosis (an iron-dependent, non-apoptotic cell death pathway). By substituting for GPx4 activity, Ebselen blocks ferroptotic cell death. This makes it a critical tool compound for ferroptosis research, which is a rapidly growing field with implications in cancer therapy, neurodegeneration (Alzheimer's, Parkinson's), ischemia-reperfusion injury, and acute kidney injury.
How should Ebselen be dissolved for biological assays?
Ebselen is soluble in DMSO (recommended for preparing concentrated stock solutions). It also dissolves in chloroform (~20 mg/mL), ethanol, methanol, acetone, and acetonitrile. For cell-based assays, prepare a concentrated DMSO stock and dilute into aqueous media — keep final DMSO concentration ≤0.1% v/v. For animal studies, common vehicles include DMSO/PEG300/saline combinations. Stock solutions should be aliquoted and stored at -20°C, protected from light.
What is Ebselen's role as an IDO1 inhibitor?
Ebselen covalently modifies a cysteine residue in indoleamine 2,3-dioxygenase 1 (IDO1), an immunosuppressive enzyme that degrades tryptophan in the tumor microenvironment and promotes immune evasion. IDO1 inhibition reactivates anti-tumor T-cell responses, making Ebselen a chemical biology probe for IDO1 and a lead for cancer immunotherapy research. The inhibition is reversible by DTT.
What safety precautions are needed when handling Ebselen?
Ebselen is classified as Acute Toxicity Category 3 (oral and inhalation) and carries GHS06/GHS08/GHS09 hazard pictograms. Handle in a fume hood with appropriate PPE (gloves, lab coat, eye protection). Avoid ingestion, inhalation, and skin/eye contact. It is classified as a hazardous substance (WGK 3 in Germany) and is toxic to aquatic life with long-lasting effects. Do not dispose down drains. Always consult the MSDS/SDS before use.
Can Ebselen be combined with silver for antimicrobial applications?
Yes. While Ebselen alone is active against MRSA and some Gram-positive bacteria, its combination with silver (Ag+) has been shown to be effective against clinically challenging multidrug-resistant Gram-negative bacteria. Silver ions disrupt the bacterial outer membrane, facilitating Ebselen's intracellular access to its bacterial targets. This combination is an active area of antimicrobial research.
Is QC documentation provided? Can I request a sample?
Every batch ships with a Certificate of Analysis (COA) including HPLC purity, NMR structural confirmation, and MS data. MSDS/SDS, solubility datasheets, and Certificates of Origin are available on request. Sample evaluation policy is available for qualified institutions — please contact us for details.

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